deeptools
deeptools.bamHandler
deeptools.correlation
deeptools.correlation_heatmap
deeptools.countReadsPerBin
deeptools.getFragmentAndReadSize
deeptools.getRatio
deeptools.getScorePerBigWigBin
deeptools.heatmapper
deeptools.heatmapper_utilities
deeptools.mapReduce
deeptools.SES_scaleFactor
deeptools.sumCoveragePerBin
deeptools.utilities
deeptools.writeBedGraph
deeptools.writeBedGraph_bam_and_bw