Please cite deepTools as follows:

Ramírez, Fidel, Devon P. Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S. Richter, Steffen Heyne, Friederike Dündar, and Thomas Manke. deepTools2: A next Generation Web Server for Deep-Sequencing Data Analysis. Nucleic Acids Research (2016). doi:10.1093/nar/gkw257.

Where deepTools are used:

  • DEEP consortium

  • public Galaxy server hosted at https://usegalaxy.org/.

  • public Galaxy instance hosted by the Max-Planck-Institute for Immunobiology and Epigenetics: deeptools.ie-freiburg.mpg.de

  • in-house Galaxy instance of the Max-Planck-Institute for Immunobiology and Epigenetics

  • Galaxy instance of the University of Freiburg, Germany

  • Galaxy instance of the ICGMB, Strasbourg, France

  • Galaxy instance of LCSB and HPC @ Uni.lu, Belval, Luxembourg


This tool suite is developed by the Bioinformatics Facility at the Max Planck Institute for Immunobiology and Epigenetics, Freiburg.

deepTools Galaxy.

code @ github.